**Computational and theoretical biology**'.

**Projects:** C19DM - Macrophage logical model, COVID-19 Disease Map

**Institutions:** Norwegian University of Science and Technology

**Expertise:** Systems Biology, Bioinformatics, Immunology, Molecular Biology

**Tools:** GINsim, Cytoscape, Computational and theoretical biology, Databases, data modeling

**Projects:** COVID-19 Disease Map

**Institutions:** Barcelona Supercomputing Center

I completed my BSc in Biology and MSc in Cell Biology by the University of Valencia. During my last undergrad year I participated in synthetic biology’s iGEM competition where I dove in the use of models in Biology, which pushed me to pursue a PhD in the Department of Applied Mathematics in the Technical University of Valencia.

My research on Metabolic Engineering of hydrogen in cyanobacteria led me to be visiting researcher at Uppsala University, Denmark Technical University and EMBL Heidelberg. ...

**Expertise:** Biochemistry, Cell biology, Data analysis, Dynamic modelling, Systems Biology, Image analysis, Genetics, Molecular Biology, R, SBML, Curation, Quantitative Biology, Physical Chemistry

**Tools:** Biochemistry and protein analysis, Bioinformatics, Systems Biology, SBML, R, ODE, Molecular biology techniques (RNA/DNA/Protein), Genetics, Dynamic modelling, Computational and theoretical biology, CellDesigner, Parameter estimation

**Projects:** pISA-tree, HYp - Spatiotemporal analysis of hypersensitive response to Potato virus Y in potato, INDIE - Biotechnological production of sustainable indole, _p_stRT, ADAPT - Accelerated Development of multiple-stress tolerAnt PoTato, tst, tst2

**Institutions:** National Institute of Biology, tst

**Roles:** Postdoc

**Expertise:** Molecular Biology, Statistics, Bioinformatics, Mathematical and statistical modeling, Programming, Data analysisMathematical modellingBioinformaticsSystems biology, Data Management, Data analysis, Visualization, Data Integration, Computational Biology

**Tools:** Bioinformatics, Computational and theoretical biology, Computational Systems Biology, Data Management, Databases, Dynamic modelling, Molecular Biology, Python, R, Systems Biology, Data Integration

Computational Biologist and Biostatistician at Department of Biotechnology and Systems Biology, National Institute of Biology (NIB)

**Projects:** HUMET Startup, COVID-19 Disease Map

**Institutions:** Centro de Investigación Príncipe Felipe, Fundación Progreso y Salud

**Expertise:** Bioinformatics, Data Management, Mathematical modelling, Genomics, Genetics, Transcriptomics, Systems Biology, Microarray analysis, Data Integration

**Tools:** Bioinformatics, Computational and theoretical biology, Computational Systems Biology, Data Management, Databases, Dynamic modelling, Genetics, Genomics, R, Systems Biology, Transcriptomics, Java

My scientific interests revolve around functional genomics, systems biology and the development of algorithms and software for the analysis of high-throughput data (mainly, but not restricted to, Next Generation Sequencing) and its application to the relationship between genotype and phenotype, mainly oriented to personalized and precision medicine. I am especially interested in the study of disease mechanisms and drug action mechanisms, drug repositioning and the definition of mechanism-based ...

**Projects:** ICYSB 2015 - International Practical Course in Systems Biology

**Institutions:** Institute of Cytology and Genetics

I am a biomodeler, PhD student. Actually, I've graduated from Novosibirsk State University on two specialities: my bachelor diploma is done in computer science and the master thesis is defended in information biology. So, I'm kind of drifting towards biology. I am a part of the Haploid Evolutionary Constructor project. Our research group studies are dedicated to the simulation of prokaryotic communities. Personally, I am involved into the simulation of spatially distributed bacterial communities ...

**Projects:** COSMIC

**Institutions:** University of Nottingham

**Roles:** Postdoc

**Expertise:** Mathematical modelling

**Tools:** Computational and theoretical biology, ODE, Partial differential equations

**Projects:** SysMO-LAB

**Institutions:** Heidelberg Institute for Theoretical Studies (HITS gGmbH)

**Projects:** TRANSLUCENT

**Institutions:** University of Applied Sciences Koblenz, Rhein Ahr Campus

**Expertise:** Ma

**Tools:** Computational and theoretical biology, Matlab, R, Biophysics, Thermodynamics, Machine Learning

I am working in the mathematical modeling of potassium homeostasis. In addition, we are developing tools and methods for the statistical analysis of biological data.

**Projects:** KOSMOBAC

**Institutions:** University of Aberdeen

Physicist, working on the modelling side.

**Projects:** KOSMOBAC

**Institutions:** University of Aberdeen

My background is physics engineering & biomedical engineering. I did my PhD in Surrey on the modelling of response of mammalian cells to radiation of different qualities. I have been working at the University of Aberdeen since November 2007 as a theoreticien research fellow of the KOSMOBAC project. We are investigating the homeostasis of ions in bacteria E. coli. I have been working at a model of the buffering capacity of the cytopplasm, arising from the presence of weak acids and bases. We ...

**Projects:** BaCell-SysMO

**Institutions:** University of Goettingen

**Expertise:** Mathematical modelling

**Tools:** Bioinformatics, Computational and theoretical biology, Python, SubtiWiki

I'm a PhD student at the lab of Prof. Dr. Jörg Stülke. My main interest is to analyze the central metabolism of Bacillus subtilis using systems biology software. I have developed an algorithm to find short pathways connecting sets of metabolites and I'm also involved in SubtiWiki, the wiki for all genes of Bacillus subtilis (http://subtiwiki.uni-goettingen.de)

**Projects:** COSMIC, BaCell-SysMO, SYSTERACT, HUMET Startup, INCOME, BESTER, iRhythmics, COVID-19 Disease Map, SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke

**Institutions:** University of Rostock

**Expertise:** dynamics of biological networks, Data analysis
Mathematical modelling
Bioinformatics
Systems biology, Dynamics and Control of Biological Networks

**Tools:** Computational and theoretical biology, ODE, Matlab, Mathematica, stimulus response experiments, differential algebraic equations, quantitative western blot analyses, quantitative western blot analysis, Stochastic models

**Institutions:** University of Tuebingen, University of Tübingen

**Expertise:** Molecular Biology, Bioinformatics, Mathematical modelling, Reactor models, dynamics of biological networks, Mathematical and statistical modeling, bioreactor models, Dynamics and Control of Biological Networks, Parameter estimation

**Tools:** Bioinformatics, Computational and theoretical biology, Transcriptomics, Model organisms, Single Cell analysis, SBML, ODE, Linear equations, Matlab, Microarray analysis, linux, Material balance based modeling, stimulus response experiments, DIVA, differential algebraic equations, evaluation of process dynamics, continuous cultivation

I'm an engineer at the MPI Magdeburg and I'm working in the field of mathematical modeling, model verification, parameter identification, model analysis and experimental design. I'm involved in two projects, KOsmoBac and PSYSMO.

**Expertise:** Mathematical modelling, Statistically and biologically inspired optimization algorithms, Mathematical modelling of biosystems and bioprocesses, Dynamics and Control of Biological Networks, Parameter estimation

**Tools:** Computational and theoretical biology, ODE, Partial differential equations, Matlab, Mathematica, Computational Systems Biology, including:
- Dynamic modelling
- Parameter estimation
- Optimal experimental design
- Dynamic optimization

We are very interested in applying a systems approach (i.e. model-based concepts and related computational tools) to problems from the biological domain. In particular, we are doing research in computational systems biology, targetting the following topics: - Parameter estimation (inverse problems, model calibration) in biochemical pathways - Optimal experimental design (optimal dynamic experiments) for Systems Biology

## - Dynamic optimization (optimal control) of biosystems and bioprocesses

...

**Projects:** BaCell-SysMO

**Institutions:** University of Stuttgart

**Expertise:** Microbiology, Biochemistry, Mathematical modelling, Bacillus subtilis, Mathematical modelling of biosystems and bioprocesses, stress responses, Systems Biology, Nonlinear Dynamics, carbon metabolism, Signalling networks, Metabolic Networks

**Tools:** Computational and theoretical biology, ODE, Matlab, Mathematica, Fermentation, Chromatography, continuous cultivation, Enzyme assay, Computational Systems Biology, Deterministic models, Dynamic modelling, fed-batch cultivation

I am a biologist in the lab of Prof. Reuss at the University of Stuttgart and I am working in the field of biotechnology and mathematical modelling.

**Projects:** COSMIC, BaCell-SysMO

**Institutions:** University of Rostock

**Roles:** Postdoc

**Expertise:** Mathematical modelling, dynamics of biological networks, Physics, bistability, Systems Biology, Data analysis, Statistical Physics, Dynamics and Control of Biological Networks

**Tools:** Computational and theoretical biology, ODE, Matlab, Mathematica, differential algebraic equations, Stochastic models, C programming, Computational Systems Biology, Dynamic modelling, Data Modelling

Modelling of cellular signalling, Dynamic Motifs and Feedback, Quantitative Measures, Theoretical Aspects of Modelling Biological Systems

**Projects:** KOSMOBAC

**Institutions:** University of Aberdeen

**Expertise:** Mathematical modelling, Physics, Programming

**Tools:** Computational and theoretical biology, ODE, linux, Stochastic models, PDE, C programing

**Projects:** MOSES

**Institutions:** Medical University Vienna

**Expertise:** Bioinformatics

**Tools:** Data Management, Computational and theoretical biology, Transcriptomics, Perl, Microarray analysis, R, PHP, SQL

General Bioinformatics

**Projects:** PSYSMO

**Institutions:** Max Planck Institute for Dynamics of Complex Technical Systems

**Projects:** TRANSLUCENT

**Institutions:** University of Applied Sciences Koblenz, Rhein Ahr Campus

Grammar school until 1998 1998-99 Alternative civilian service 1999-2002 Professional education as male nurse 2002-2007 Study of Biomathematics 2007-... PhD student in TRANSLUCENT project

**Projects:** COSMIC

**Institutions:** University of Nottingham

I am a Birmingham and MRC Fellow in mathematical biology. Specialising in the modelling of gene regulation networks using both numerical and analytical approaches, my work spans a range of biological applications, from drug development to bioenergy to understanding bacterial behaviour. My MRC fellowship gave me the opportunity to gain experimental training in order to generate the complementary data required to adopt a truly interdisciplinary approach to mathematical modelling in biology.

I worked ...

**Projects:** KOSMOBAC

**Institutions:** University of Aberdeen

**Expertise:** Mathematical modelling, Mathematical modelling of biosystems and bioprocesses

**Tools:** Computational and theoretical biology, ODE, linux, data modeling, enzymatic analyses, Stochastic models, C programming, Computational Systems Biology, Deterministic models, including:- Dynamic modelling- Parameter estimation- Optimal experimental design- Dynamic optimization

**Projects:** SysMO-LAB

**Institutions:** Wageningen University & Research

**Expertise:** Bioinformatics, Mathematical modelling, Reactor models, dynamics of biological networks.

**Tools:** Molecular Biology, Cell biology, Computational and theoretical biology, Metabolomics, Model organisms, SBML, ODE, Partial differential equations, Algebraic equations, Linear equations, Copasi, JWS Online, Matlab, Mathematica, SQL, Material balance based modeling

I'm a modeller, specialized in kinetic modeling of biochemical networks. My focus in the SysMO-LAB consortium is on creating models of Lactococcus lactis glycolysis and couple this to other related lactic acid bacteria like Streptococcus pyogenes and Enterococcus faecalis. Besides kinetic modeling, I'm also interested in combining various modeling techniques (genome-scale modeling, qualitative modeling).

**Projects:** COSMIC

**Institutions:** University of Rostock

biomathematician, PhD student at the University of Rostock, Systems Biology Group Rostock

**Projects:** BaCell-SysMO

**Institutions:** University of Rostock

**Expertise:** Mathematical modelling, Bacillus subtilis, Deterministic modelling of gene regulation networks, stress responses, Systems Biology, sensitivity analysis, Dynamics and Control of Biological Networks, Parameter estimation

**Tools:** Biochemistry, Computational and theoretical biology, ODE, Matlab, linux, Stochastic models, Deterministic models, Dynamic modelling

Modelling of the general stress response activation cascade of sigB in B. subtilis in response to starvation.